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1. Not one that you can directly boot from, no. But you can use a program like iPartition to divide the drive into multiple volumes, without erasing it. You can also store a backup that's bootable after restoration in a sparse image on the drive. See "Storing a backup alongside other files on a destination drive" in the User's Guide.
Note, though, that I recommend partitioning.
(You can't boot from a backup in a folder, anyway -- OSX has quite stringent requirements about where things must be stored.)
2. Absolutely not. Files are stored in a completely standard, OSX format. Nothing about the storage is specific to SuperDuper! at all... and that's quite deliberate.
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--Dave Nanian
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