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I verified that the current backup scheme only has "Finally SuperDuper! will quit" at the end. And then I deleted it and recreated it, just to be safe.
I do suspect that maybe when I was setting up SD originally I tested it out with a restart and boot from backup at the end to make sure it worked, without following up by checking the Startup Disk prefs after setting up the backup the way I really wanted it. Would SD have changed that Startup Disk option on my behalf back when I was testing it out? Or does it cause a reboot from backup in some other way?
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