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I am also experiencing this since 2.6/2.61 (whenever it was that we had to do schedules reset). I have one single-partition working drive in my MacPro and three internal drives that are each SD! clones (Daily, Weekly and Monthly). Previously SD! would automatically mount and unmount the internal clone drives, but since 2.6.1, although it mounts and backs up OK, the program is unable to also unmount the drives.
Incidentally, I had forgotten to put the clones in Spotlight's 'no search' privacy preference, but still have this behavior after doing so.
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