Dave,
I rebooted the iMac. Strange behavior, it stays in Safe Boot even if I don't hold down the shift key. Anyways, it still wouldn't copy over after reboot. I ended up repairing permissions on the external drive, and that seemed to work! Transferring back to the iMac went well. Running the iMac now on its internal drive, yet it still defaults into Safe Boot without any prompting from me. Tried several restarts with no avail. Also restarts "hang", and I have to do a hard reset.
SD is a great piece of software, but I came upon some issues on my system that prevented a clean transfer of files from multiple partitions to a single one.
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