When you made this clone, were you logged in as root? Also, what version of OSX were you running?
The problem here is that the original files have strange ownership. If you boot from the original drive, and do an "sudo ls -l" on this same folder, you'll see that ownership changes to root.
SuperDuper! 1.5 should handle this explicitly on the fly, and I just re-verified the fix here. Clearly there's something a bit unusual about your case.
Could you send your SuperDuper! log from the old machine to the support address? I'll take a look and see if I can find an explanation.
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--Dave Nanian
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