They are clearly two separate areas:
$touch /Volumes/earth/Applications/1a
$touch /Volumes/earth\ 1/Applications/1b
$ls -la /Volumes/earth/Applications/
total 32
drwxr-xr-x@ 3 me staff 102 Nov 11 2010 Applications
-rw-r--r-- 1 me admin 0 Nov 21 17:04 1a
$ls -la /Volumes/earth\ 1/Applications/
total 32
drwxr-xr-x@ 3 me staff 102 Nov 11 2010 Applications
-rw-r--r-- 1 me admin 0 Nov 21 17:04 1b
What I dont get is why they are identical at this point. I have been installing apps and setting up 10.5 for a few days now, Just today I installed a new app, and it now lives in both locations. I have not tried, nor do I have the ability to restore any files.
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