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No. We copy volume to volume, so you'd need to erase the drive, but that's easy to do, and there's no need to copy the boot record. But you don't use MBR with Macs. You used GUID/APM (depending on Mac).
You'd generally want to partition that drive into two volumes, one for the backup and one for the "other stuff", using either GUID or APM (GUID in your case).
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